SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

JSR-223-compliant BeanShell scripting language plugin.

The executable which runs ImageJ. Its purpose is also to make sure that updates downloaded by the ImageJ Updater will be put into place before starting the Java Virtual Machine.

ImageJ plugin that uses automated Sholl to perform neuronal morphometry directly from segmented images and traces from Simple Neurite Tracer

Parallelization framework for SciJava applications.

The framework for quantification of neuronal anatomy

Server- and client-side communication between ImageJ and OMERO.

The Labkit image segmentation tool for Fiji.

Old compatibility layer for Fiji.

Backend-agnostic OME-Zarr core: PyramidBackend/PyramidContents data model, metadata, and ZarrUtils. Requires an N5 or zarr-java backend at runtime.

This adapter package enables the use of SLF4J-based logging within SciJava Common's logging framework. It is kept separate from the SciJava Common core classes to avoid proliferating SLF4J dependencies to downstream code that does not need ...