A Java API for high-throughput sequencing data (HTS) formats

Compression utility classes.

Biological entities and their equivalents in different file formats typically used in bioinformatics

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Biological entities and their equivalents in different file formats typically used in bioinformatics

Biological entities and their equivalents in different file formats typically used in bioinformatics

Core Genometry (Data Models)

OpenCGA Core

OpenCGA Storage Core

Genomics compute kernels optimized for Intel Architecture

OpenCGA Catalog