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HTSJDK

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using HTSJDK (133)
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91.Bcbio Variation Recall

bcbio.variation.recall » bcbio.variation.recall MIT

Parallel merging, squaring off and ensemble calling for genomic variants.
Last Release on Dec 29, 2018

92.Spark Genomics

com.databricks » spark-genomics Apache

Glow: Genomics on Apache Spark
Last Release on Oct 4, 2019

93.PPC64 Native Library

com.github.yhcheng.ppc64native » ppc64native BSD +2

Genomics native code for PPC64 platforms (LE only)
Last Release on Feb 14, 2018

94.Genomics Dataflow Core Components

com.google.allenday » genomics-dataflow-core Apache

Components for implementation Google Cloud Dataflow piplines to solve genomics processing tasks
Last Release on Oct 18, 2020

95.GenomicsDB GATK4

com.intel » genomicsdb-gatk4

Java API and Apache Spark bindings for GenomicsDB
Last Release on Mar 14, 2017

96.Jannovar Filter

de.charite.compbio » jannovar-filter BSD

jannovar-filter helps with applying threshold-based filters for WES/WGS filters
Last Release on Sep 13, 2022

97.Jannovar Inheritance Checker

de.charite.compbio » jannovar-inheritance-checker BSD

jannovar-inheritance-checker is a library to filter variantContext with inheritances
Last Release on Dec 19, 2016

98.Jannovar Stats

de.charite.compbio » jannovar-stats BSD

jannovar-stats helps in aggregating statistics about variants and variant annotations
Last Release on Sep 13, 2022

99.Jannovar Vardbs

de.charite.compbio » jannovar-vardbs BSD

jannovar-vardbs helps with using variant annotation databases, e.g. dbSNP
Last Release on Sep 13, 2022

100.Genepi Annotate

genepi » genepi-annotate

Genepi Annotate
Last Release on Sep 17, 2024