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HTSJDK

A Java API for high-throughput sequencing data (HTS) formats

Artifacts using HTSJDK (133)
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31.Google Genomics Utils3 usages

com.google.cloud.genomics » google-genomics-utils Apache

Common Java files for Google Genomics integrations.
Last Release on Oct 30, 2017

32.Hadoop BAM3 usages

org.hammerlab » hadoop-bam MIT

A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.
Last Release on Aug 6, 2017

33.Gorpipe3 usages

org.gorpipe » gor-gortools AGPL

GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative query language in a parallel execution engine
Last Release on Nov 1, 2022

34.Utilities3 usages

org.hammerlab.genomics » utils Apache

utils
Last Release on Jun 16, 2018

35.Google Genomics Utils For GATK3 usages

com.google.cloud.genomics » gatk-tools-java Apache

Common Java files for Google Genomics integrations with GATK/Picard/HTSJDK
Last Release on May 11, 2015

36.Jannovar HTSJDK3 usages

de.charite.compbio » jannovar-htsjdk BSD

jannovar-htsjdk is the module for bridging between Jannovar and HTSJDK
Last Release on Sep 13, 2022

37.GATK43 usages

org.broadinstitute » gatk Apache

Development on GATK 4
Last Release on Apr 15, 2025

38.OpenCGA Server2 usages

org.opencb.opencga » opencga-server Apache

OpenCGA Server
Last Release on Aug 7, 2025

39.Gorpipe2 usages

org.gorpipe.gor » gor-model AGPL

GORpipe allows analysis of large sets of genomic and phenotypic tabular data using a declarative query language in a parallel execution engine
Last Release on Mar 4, 2021

40.GenomicsDB2 usages

org.genomicsdb » genomicsdb

Java API for GenomicsDB
Last Release on Jan 31, 2025