Home » org.scijava » pom-scijava » 13.1.0 » Dependencies

SciJava Parent POM » 13.1.0

This POM provides a parent from which participating projects can declare their build configurations. It ensures that projects all use a compatible build environment, including Java version, as well as versions of dependencies and plugins.

Compile Dependencies (0)

Category/LicenseGroup / ArtifactVersionUpdates

Managed Dependencies (300)

Category/LicenseGroup / ArtifactVersionUpdates
CSV Apache 2.0
au.com.bytecode » opencsv
A simple library for reading and writing CSV in Java
2.45.12.0
GPL 3.0
ca.mcgill » Sholl_Analysis
ImageJ plugin that uses automated Sholl to perform neuronal morphometry directly from segmented images and traces from ...
3.6.124.0.2
Logging EPL 2.0 +1
ch.qos.logback » logback-classic2 vulnerabilities
Implementation of the SLF4J API for Logback, a reliable, generic, fast and flexible logging framework.
1.1.71.5.38
Logging EPL 2.0 +1
ch.qos.logback » logback-core9 vulnerabilities
Core implementation of Logback, a reliable, generic, fast and flexible logging framework.
1.1.71.5.38
Apache 2.0
cisd » jhdf5
HDF5 is an efficient, well-documented, non-proprietary binary data format
14.12.519.04.1
BSD 3-clause
com.fifesoft » rsyntaxtextarea
RSyntaxTextArea is the syntax highlighting text editor for Swing applications. Features include syntax highlighting for ...
2.5.84.0.0
BSD 3-clause
com.fifesoft » autocomplete
AutoComplete is a library allowing you to add IDE-like auto-completion (aka "code completion" or "Intellisense") to any ...
2.5.83.3.3
BSD 3-clause
com.fifesoft » languagesupport
A library adding code completion and other advanced features for Java, JavaScript, Perl, and other languages to ...
2.5.83.4.1
JSON Lib Apache 2.0
com.google.code.gson » gson1 vulnerability
Gson is a Java library that can be used to convert Java Objects into their JSON representation. It can also be used to ...
2.72.14.0
Core Utils Apache 2.0
com.google.guava » guava3 vulnerabilities
Guava is a suite of core and expanded libraries that include
19.033.6.0-jre
PDF Lib AGPL 3.0
com.itextpdf » itextpdf2 vulnerabilities
A Free Java-PDF library
5.1.15.5.13.5
SSH Lib BSD +1
com.jcraft » jsch1 vulnerability
JSch is a pure Java implementation of SSH2
0.1.492.28.4
Compression BSD
com.jcraft » jzlib
JZlib is a re-implementation of zlib in pure Java
1.1.21.1.3
Swing Library BSD
com.miglayout » miglayout
MiGLayout - Java Layout Manager for Swing
3.7.411.4.3
com.sun.media » jai-codec
Java Advanced Imaging Codecs supporting support BMP, GIF (read only),
1.1.3✔
Base64 Apache 2.0
commons-codec » commons-codec
The Apache Commons Codec component contains encoders and decoders for
1.81.22.0
edu.mines » mines-jtk
POM was created by Sonatype Nexus
20151125✔
LGPL 3.0
fr.inra.ijpb » MorphoLibJ_
Mathematical morphology library and plugins for ImageJ/Fiji.
1.3.21.6.5
Math Lib CC0 1.0 +1
gov.nist.math » jama
JAMA is a basic linear algebra package for Java. It provides
1.0.3✔
BSD
io.scif » scifio1 vulnerability
SCIFIO is a library for scientific N-dimensional image I/O.
0.31.00.43.1
BSD
io.scif » scifio-bf-compat
Compatibility layer for using un-converted Bio-Formats readers in SCIFIO applications.
2.0.2scifio-bf-compat-4.1.1
BSD
io.scif » scifio-cli
Pluggable command-line tools for performing SCIFIO-based image IO operations.
0.3.3scifio-cli-0.6.1
BSD
io.scif » scifio-hdf5
SCIFIO plugins for HDF5-based formats.
0.1.1scifio-hdf5-0.2.2
BSD
io.scif » scifio-jai-imageio
Java API to handle JPEG and JPEG2000 files. Used by Bio-Formats to read images compressed with JPEG2000 and lossless ...
1.1.0scifio-jai-imageio-1.1.1
GPL 2.0
io.scif » scifio-lifesci
Provides SCIFIO support for proprietary life science formats.
0.7.00.9.0
BSD
io.scif » scifio-ome-xml
SCIFIO support for the OME data model, including OME-XML and OME-TIFF.
0.14.20.17.1
Java Spec
javax.media » jai-core
POM was created by Sonatype Nexus
1.1.3✔
Apache 2.0
jitk » jitk-tps
A java port of the ITK thin plate spline implementation.
2.1.03.0.3
Date/Time Apache 2.0
joda-time » joda-time
Joda-Time provides a quality replacement for the Java date and time classes. Note that from Java SE 8 onwards, users ...
2.9.42.14.2
Testing EPL 2.0
junit » junit1 vulnerability
JUnit Jupiter is the API for writing tests using JUnit 5.
4.126.1.1
GPL 2.0
mpicbg » mpicbg
MPICBG Core Library.
1.1.11.6.6
GPL 2.0
mpicbg » mpicbg_
MPICBG plugin for Fiji.
1.1.11.6.6
BSD
net.imagej » imagej
ImageJ2 is a rewrite of ImageJ for multidimensional image data, with a focus on scientific imaging.
2.0.0-rc-572.17.0
Public
net.imagej » ij
ImageJ is an open source Java image processing program inspired by NIH Image for the Macintosh.
1.51h1.54p
BSD
net.imagej » ij1-patcher
A runtime patcher to introduce extension points into the original ImageJ (1.x). This project offers extension points for ...
0.12.52.0.0
BSD
net.imagej » imagej-common
This library contains ImageJ's core image data model, based on ImgLib2. It is the primary mechanism by which image data ...
0.24.2imagej-common-2.0.4
BSD
net.imagej » imagej-deprecated
Deprecated ImageJ packages.
0.1.1imagej-deprecated-0.2.0
BSD
net.imagej » imagej-launcher
The executable which runs ImageJ. Its purpose is also to make sure that updates downloaded by the ImageJ Updater will be ...
4.0.5✔
BSD
net.imagej » imagej-legacy
The legacy component enables backward compatibility with the original version of ImageJ (1.x). It contains the code ...
0.23.42.0.3
BSD
net.imagej » imagej-mesh
3D mesh structures for ImageJ.
0.1.00.8.2
BSD
net.imagej » imagej-notebook
Functions for working with ImageJ in scientific notebook software.
0.2.00.7.1
GPL 2.0
net.imagej » imagej-omero
Server- and client-side communication between ImageJ and OMERO.
0.4.01.0.0-5.6
BSD
net.imagej » imagej-ops
ImageJ Operations: a framework for reusable algorithms.
0.35.12.2.0
BSD
net.imagej » imagej-plugins-commands
Core commands for ImageJ.
0.7.01.0.0
BSD
net.imagej » imagej-plugins-tools
Core tool plugins for ImageJ.
0.3.00.3.1
BSD
net.imagej » imagej-plugins-uploader-ssh
ImageJ Updater support for uploading via SSH.
0.3.10.3.2
BSD
net.imagej » imagej-plugins-uploader-webdav
ImageJ Updater support for uploading via WebDAV.
0.2.10.3.3
BSD
net.imagej » imagej-scripting
ImageJ applications and examples for SciJava script languages.
0.4.01.0.0
BSD
net.imagej » imagej-ui-awt
ImageJ UI for Java AWT.
0.3.0imagej-ui-awt-0.3.1
BSD
net.imagej » imagej-ui-swing
ImageJ UI for Java Swing.
0.21.11.2.2
BSD
net.imagej » imagej-updater
Keeps components of ImageJ up-to-date.
0.8.22.0.3
BSD
net.imagej » imagej-updater
Keeps components of ImageJ up-to-date.
0.8.22.0.3
BSD
net.imagej » imagej-usage
Anonymous usage statistics plugin for ImageJ.
0.4.0imagej-usage-0.4.1
GPL 3.0
net.imagej » op-finder
Interactive UI component for browsing and running available Ops.
0.1.0op-finder-0.1.4
BSD
net.imglib2 » imglib2
A multidimensional, type-agnostic image processing library.
3.2.18.0.1
BSD
net.imglib2 » imglib2-algorithm
Useful image processing algorithms.
0.6.20.18.0
BSD
net.imglib2 » imglib2-algorithm-fft
Image processing algorithms related to Fast Fourier Transforms.
0.1.2imglib2-algorithm-fft-0.2.1
GPL 2.0
net.imglib2 » imglib2-algorithm-gpl
Useful image processing algorithms, licensed under the GPL.
0.1.5imglib2-algorithm-gpl-0.3.1
BSD
net.imglib2 » imglib2-ij
ImgLib2 display logic using ImageJ.
2.0.0-beta-35imglib2-ij-2.0.1
BSD
net.imglib2 » imglib2-realtransform
Real space coordinate transformations.
2.0.0-beta-344.0.3
BSD
net.imglib2 » imglib2-roi
Regions of interest in ImgLib2.
0.4.40.12.1
GPL 2.0
net.imglib2 » imglib2-script
ImgLib2 scripting infrastructure.
0.2.00.2.5
BSD
net.imglib2 » imglib2-ui
Interactive image visualization using ImgLib2.
2.0.0-beta-312.0.1
Native Access Apache 2.0 +1
net.java.dev.jna » jna
JNA provides Java programs easy access to native shared libraries without writing anything but Java code - no JNI or ...
4.2.25.19.1
EPL 2.0 +1
net.sf.jgrapht » jgrapht0.8.31.5.3
nz.ac.waikato.cms.weka » weka3.7.113.6.12
Machine Learning GPL 3.0
nz.ac.waikato.cms.weka » weka-dev
The Waikato Environment for Knowledge Analysis (WEKA), a machine
3.7.113.9.7
GPL 2.0
ome » bio-formats_plugins
A collection of plugins for ImageJ, including the Bio-Formats Importer, Bio-Formats Exporter, Bio-Formats Macro ...
5.3.28.5.0
BSD 2-clause
ome » formats-api
Top-level reader and writer APIs.
5.3.28.5.0
BSD 2-clause
ome » formats-bsd
Reader and writer implementations that are BSD-licensed.
5.3.28.5.0
GPL 2.0
ome » formats-gpl
A library for reading and writing popular microscopy file formats.
5.3.28.5.0
Math Lib Apache 2.0
org.apache.commons » commons-math3
Alternate implementations of JDK's "Math" functions.
3.6.14.0-beta1
Apache 2.0
org.apache.xmlgraphics » batik-anim
Batik animation engine
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-awt-util
Batik AWT utilities
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-bridge3 vulnerabilities
Batik bridge
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-codec
Batik image codecs
1.81.19
CSS, LESS, SASS Apache 2.0
org.apache.xmlgraphics » batik-css
Batik CSS engine
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-dom
Batik DOM implementation
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-ext
Batik external code
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-extension
Batik Extension Support
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-gui-util
Batik GUI utilities
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-gvt
Batik Graphics Vector Tree (GVT)
1.81.19
MPL 1.1
org.apache.xmlgraphics » batik-js
This is a patched version of Rhino 1.6R5 for use by Batik. See
1.8✔
SVG Libraries Apache 2.0
org.apache.xmlgraphics » batik-parser
Batik SVG microsyntax parser
1.81.19
SVG Libraries Apache 2.0
org.apache.xmlgraphics » batik-rasterizer
Batik SVG Rasterizer Application
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-rasterizer-ext
Batik SVG Rasterizer Application with Extensions
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-script1 vulnerability
Batik script language support
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-slideshow
Batik SVG Slideshow Application
1.81.18
Apache 2.0
org.apache.xmlgraphics » batik-squiggle
Batik SVG Browser Application
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-squiggle-ext
Batik SVG Browser Application with Extensions
1.81.19
SVG Libraries Apache 2.0
org.apache.xmlgraphics » batik-svg-dom
Batik SVG DOM implementation
1.81.19
SVG Libraries Apache 2.0
org.apache.xmlgraphics » batik-svggen
Batik Java2D SVG generator
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-svgpp
Batik SVG Pretty Printer Application
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-swing
Batik SVG Swing components
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-transcoder1 vulnerability
Batik SVG transcoder
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-ttf2svg
Batik Truetype Font to SVG Font Converter Application
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-util
Batik utility library
1.81.19
Apache 2.0
org.apache.xmlgraphics » batik-xml
Batik XML utilities
1.81.19
Annotation Lib Apache 2.0 +1
org.eclipse.jetty » jetty-annotations
Jetty Annotations Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-ant9.3.11.v2016072111.0.26
org.eclipse.jetty » jetty-clien9.3.11.v20160721
Apache 2.0 +1
org.eclipse.jetty » jetty-continuation
Asynchronous API
9.3.11.v201607219.4.58.v20250814
Apache 2.0 +1
org.eclipse.jetty » jetty-deploy
Jetty Deployer Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-http3 vulnerabilities
Jetty module for handling HTTP protocol logic, including requests, responses, and connection management.
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-http-spi
Jetty OpenJDK HTTP SPI Artifact
9.3.11.v2016072112.1.11
I/O Apache 2.0 +1
org.eclipse.jetty » jetty-io
Jetty module that provides I/O utilities and abstractions used by other Jetty components.
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-jaas
Jetty JAAS support
9.3.11.v2016072111.0.26
Apache 2.0 +1
org.eclipse.jetty » jetty-jaspi
Jetty security infrastructure
9.3.11.v2016072111.0.26
Apache 2.0 +1
org.eclipse.jetty » jetty-jmx
Jetty JMX Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-jndi
Jetty JNDI Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-jsp9.3.11.v2016072111.0.26
Maven Plugins Apache 2.0 +1
org.eclipse.jetty » jetty-jspc-maven-plugin9.3.11.v2016072111.0.26
Maven Plugins Apache 2.0 +1
org.eclipse.jetty » jetty-maven-plugin
Jetty maven plugins
9.3.11.v2016072111.0.26
Apache 2.0 +1
org.eclipse.jetty » jetty-monitor
Performance monitoring artifact for jetty.
9.3.11.v201607219.3.30.v20211001
Jetty Session Mgr Apache 2.0 +1
org.eclipse.jetty » jetty-nosql9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-plus
Jetty JNDI and Annotation Support Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-proxy
Jetty Proxy Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-rewrite
Jetty Rewrite Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-runner9.3.11.v2016072111.0.26
Apache 2.0 +1
org.eclipse.jetty » jetty-security
Jetty Server Security Artifact
9.3.11.v2016072112.1.11
Web Server Apache 2.0 +1
org.eclipse.jetty » jetty-server13 vulnerabilities
Jetty Server Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-servlet
Jetty Servlet Container
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-servlets3 vulnerabilities
Utility Servlets from Jetty
9.3.11.v2016072111.0.26
Apache 2.0 +1
org.eclipse.jetty » jetty-spring9.3.11.v201607219.4.58.v20250814
Apache 2.0 +1
org.eclipse.jetty » jetty-start
Jetty Start Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-util
Jetty Utilities Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-util-ajax
Jetty JSON Utilities Artifact
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-webapp1 vulnerability
Jetty web application support
9.3.11.v2016072112.1.11
Apache 2.0 +1
org.eclipse.jetty » jetty-xml
Jetty XML Artifact
9.3.11.v2016072112.1.11
org.janelia » H5J_Loader_Plugin
A Maven project implementing an ImageJ plugin
1.0.61.1.5
Bytecode Apache 2.0 +2
org.javassist » javassist
Javassist (JAVA programming ASSISTant) makes Java bytecode manipulation
3.20.0-GA3.32.0-GA
XML Processing
org.jdom » jdom21 vulnerability
A complete, Java-based solution for accessing, manipulating,
2.0.62.0.6.1
LGPL
org.jfree » jcommon
JCommon is a free general purpose Java class library that is used in
1.0.231.0.24
Chart Library LGPL
org.jfree » jfreechart
JFreeChart is a class library, written in Java, for generating charts.
1.0.191.5.6
Native Access BSD 3-clause
org.jogamp.gluegen » gluegen-rt-main
JNI binding generator (runtime)
2.3.22.6.0
Apache 2.0 +3
org.jogamp.joal » joal-main
Java™ Binding for the OpenAL® API
2.3.22.5.0
OpenCL Lib Apache 2.0 +3
org.jogamp.jocl » jocl-main
Java™ Binding for the OpenCL® API
2.3.22.5.0
OpenGL Lib Apache 2.0 +3
org.jogamp.jogl » jogl-all-main
Java™ Binding for the OpenGL® API
2.3.22.5.0
org.jpedal » jpedalSTD2.80b11✔
BSD 2-clause
org.openmicroscopy » ome-common
Contains common I/O, date parsing, and XML processing classes.
5.3.16.3.0
BSD 2-clause
org.openmicroscopy » ome-xml
A library for working with OME-XML metadata structures.
5.3.16.6.0
Build Tool BSD
org.scijava » minimaven
A minimal build system interpreting Maven-style pom.xml files
2.2.02.2.3
Native Access BSD
org.scijava » native-lib-loader
A library for loading native libraries.
2.1.42.5.0
BSD
org.scijava » parsington
A general-purpose mathematical expression parser, which converts infix expression strings into postfix queues and/or ...
1.0.03.2.0
BSD
org.scijava » scijava-cache
SciJava cache implementation using Google Guava.
0.1.10.1.2
BSD
org.scijava » scijava-common
SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism ...
2.62.02.100.1
BSD
org.scijava » scijava-common
SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism ...
2.62.02.100.1
BSD
org.scijava » scijava-config
SciJava Configuration is a shared collection of files for SciJava software. It provides configuration files for common ...
2.0.12.0.3
BSD
org.scijava » scijava-java3d
Utility classes for working with Java 3D.
0.1.0✔
BSD
org.scijava » scijava-log-slf4j
This adapter package enables the use of SLF4J-based logging within SciJava Common's logging framework. It is kept ...
1.0.31.0.6
BSD
org.scijava » scijava-plugins-commands
Core commands for SciJava applications.
0.2.20.2.5
BSD
org.scijava » scijava-plugins-platforms
Core platform plugins for SciJava applications.
0.2.1scijava-plugins-platforms...
BSD
org.scijava » scijava-plugins-text-markdown
Core text format plugin for Markdown.
0.1.2scijava-plugins-text-mark...
BSD
org.scijava » scijava-plugins-text-plain
Core text format plugin for plain text.
0.1.2scijava-plugins-text-plai...
BSD
org.scijava » scijava-ui-awt
SciJava user interface components for Java AWT.
0.1.50.1.7
BSD
org.scijava » scijava-ui-swing
SciJava user interface components for Java Swing.
0.9.11.0.4
BSD
org.scijava » script-editor
Script Editor and Interpreter for SciJava script languages.
0.1.11.2.0
BSD
org.scijava » scripting-beanshell
JSR-223-compliant BeanShell scripting language plugin.
0.3.11.0.0
BSD
org.scijava » scripting-clojure
JSR-223-compliant Clojure scripting language plugin.
0.1.51.0.0
BSD
org.scijava » scripting-groovy
JSR-223-compliant Groovy scripting language plugin.
0.2.51.0.1
BSD
org.scijava » scripting-java
JSR-223-compliant Java scripting language plugin.
0.4.01.0.1
BSD
org.scijava » scripting-javascript
JSR-223-compliant JavaScript scripting language plugin.
0.4.3scripting-javascript-1.0.0
BSD
org.scijava » scripting-jruby
JSR-223-compliant JRuby scripting language plugin.
0.2.4scripting-jruby-0.3.1
BSD
org.scijava » scripting-jython
JSR-223-compliant Jython scripting language plugin.
0.4.0scripting-jython-1.0.1
BSD
org.scijava » scripting-matlab
MATLAB scripting language plugin.
0.5.1scripting-matlab-0.5.3
GPL 2.0
org.scijava » scripting-renjin
SciJava wrapper around the Renjin R implementation.
0.2.10.2.3
BSD
org.scijava » scripting-scala
JSR-223-compliant Scala scripting language plugin.
0.1.0scripting-scala-0.3.2
Swing Library BSD
org.scijava » swing-checkbox-tree
A set of components for use with Swing JTrees that provide support for JCheckBox nodes.
1.0.11.0.2
GPL 3.0
org.scijava » jep
JEP is a Java library for parsing and evaluating mathematical expressions.
2.4.2✔
GPL 2.0 +1
org.scijava » j3dcore
3D Graphics API for the Java Platform
1.6.0-scijava-2✔
BSD
org.scijava » j3dutils
Utility functions for the Java 3D Graphics API
1.6.0-scijava-2✔
GPL 2.0 +1
org.scijava » vecmath
Math functions for the Java 3D Graphics API
1.6.0-scijava-2✔
Microbenchmarks Apache 2.0
org.scijava » junit-benchmarks
A framework for writing performance micro-benchmarks using JUnit4 annotations, forked from ...
0.7.4-scijava✔
Logging MIT
org.slf4j » slf4j-api
API for SLF4J (The Simple Logging Facade for Java) which serves as a simple facade or abstraction for various logging ...
1.7.212.0.18
Logging MIT
org.slf4j » slf4j-ext1 vulnerability
Extensions to the SLF4J API
1.7.212.0.18
Logging Bridge MIT
org.slf4j » slf4j-jcl
SLF4J JCL Binding
1.7.211.7.36
Logging Bridge MIT
org.slf4j » slf4j-jdk14
SLF4J JDK14 Provider
1.7.212.0.18
Logging MIT
org.slf4j » slf4j-nop
Binding/provider for NOP, an implementation that silently discards all logging messages.
1.7.212.0.18
Logging MIT
org.slf4j » slf4j-simple
Binding/provider for SLF4J, which outputs all events to System.err. Only messages of level INFO and higher are printed.
1.7.212.0.18
org.tinyjee.jgraphx » jgraphx
JGraphX Swing Component - Java Graph Visualization Library
1.10.4.13.4.1.3
PostgreSQL Driver BSD 2-clause
postgresql » postgresql
PostgreSQL JDBC Driver Postgresql
8.2-507.jdbc342.7.13
GPL 3.0
sc.fiji » fiji
Fiji is a distribution of ImageJ for the life sciences.
2.0.02.14.0
GPL 3.0
sc.fiji » AnalyzeSkeleton_
Analysis of 2D and 3D skeleton images.
3.1.13.4.2
GPL 3.0
sc.fiji » Anisotropic_Diffusion_2D
Anisotropic Diffusion 2D plugin for Fiji.
2.0.02.0.1
GPL 3.0
sc.fiji » Archipelago_Plugins
Archipelago Plugins plugin for Fiji.
0.5.20.5.4
GPL 3.0
sc.fiji » Arrow_
Arrow plugin for Fiji.
2.0.12.0.2
GPL 3.0
sc.fiji » Auto_Threshold
Auto Threshold plugin for Fiji.
1.16.41.18.0
GPL 2.0
sc.fiji » BalloonSegmentation_
Balloon Segmentation plugin for Fiji.
2.0.03.0.1
GPL 3.0
sc.fiji » Bug_Submitter
Bug Submitter plugin for Fiji.
2.1.02.1.1
GPL 3.0
sc.fiji » CPU_Meter
CPU Meter plugin for Fiji.
2.0.02.0.2
GPL 3.0
sc.fiji » Calculator_Plus
Calculator Plus plugin for Fiji.
2.0.02.0.1
GPL 3.0
sc.fiji » Cell_Counter
Cell Counter plugin for ImageJ.
2.2.13.0.0
GPL 3.0
sc.fiji » Colocalisation_Analysis
Fiji's plugin for colocalization analysis.
2.2.13.0.6
GPL 3.0
sc.fiji » Color_Histogram
Color Histogram plugin for Fiji.
2.0.62.0.7
GPL 3.0
sc.fiji » Color_Inspector_3D
Color Inspector 3D plugin for Fiji.
2.3.12.5.0
GPL 3.0
sc.fiji » Colour_Deconvolution
Colour Deconvolution plugin for Fiji.
3.0.13.0.3
GPL 3.0
sc.fiji » CorrectBleach_
CorrectBleach plugin for Fiji.
2.0.12.1.0
GPL 3.0
sc.fiji » Correct_3D_Drift
Script to register time frames (stacks) to each other.
1.0.01.0.7
GPL 3.0
sc.fiji » Descriptor_based_registration
Descriptor based registration plugin for Fiji.
2.1.12.1.8
GPL 3.0
sc.fiji » Dichromacy_
Dichromacy plugin for Fiji.
2.1.02.1.2
BSD
sc.fiji » Differentials_2.0.0✔
GPL 3.0
sc.fiji » Directionality_
Directionality plugin for Fiji.
2.0.12.3.0
BSD
sc.fiji » Extended_Depth_Field2.0.1✔
GPL 3.0
sc.fiji » FS_Align_TrakEM2
FS Align TrakEM2 plugin for Fiji.
2.0.1FS_Align_TrakEM2-2.0.4
GPL 3.0
sc.fiji » Feature_Detection
Feature Detection plugin for Fiji.
2.0.1Feature_Detection-2.0.3
GPL 3.0
sc.fiji » 3D_Blob_Segmentation
3D Blob Segmentation plugin for Fiji.
3.0.04.0.0
GPL 2.0
sc.fiji » Fiji_Archipelago
Fiji Archipelago plugin for Fiji.
2.0.0Fiji_Archipelago-2.0.1
GPL 3.0
sc.fiji » Fiji_Developer
Fiji Developer plugin for Fiji.
2.0.5Fiji_Developer-2.0.8
GPL 3.0
sc.fiji » Fiji_Package_Maker
Fiji Package Maker plugin for Fiji.
2.1.0Fiji_Package_Maker-2.1.1
GPL 2.0
sc.fiji » Fiji_Plugins
Fiji Plugins plugin for Fiji.
3.1.0Fiji_Plugins-3.1.3
BSD
sc.fiji » Fiji_Updater2.0.0✔
GPL 3.0
sc.fiji » FlowJ_
FlowJ plugin for Fiji.
1.29.22.0.1
GPL 3.0
sc.fiji » Graph_Cut
Graph Cut plugin for Fiji.
1.0.1Graph_Cut-1.0.2
GPL 3.0
sc.fiji » Gray_Morphology
Gray Morphology plugin for Fiji.
2.3.3Gray_Morphology-2.3.5
GPL 3.0
sc.fiji » Helmholtz_Analysis
Helmholtz Analysis plugin for Fiji.
2.0.1Helmholtz_Analysis-2.0.2
GPL 3.0
sc.fiji » IJ_Robot
IJ Robot plugin for Fiji.
2.0.0IJ_Robot-2.0.1
GPL 3.0
sc.fiji » IO_
IO plugin for Fiji.
3.0.14.3.0
BSD
sc.fiji » Image_5D
The Image5D plugins extend image stacks to 5 dimensions: x, y, channel (color), slice (z), frame (t).
2.0.1Image_5D-2.0.2
GPL 3.0
sc.fiji » 3D_Objects_Counter
3D Objects Counter plugin for Fiji.
2.0.03D_Objects_Counter-2.0.1
GPL 3.0
sc.fiji » 3D_Viewer
3D Viewer for visualizing image stacks three-dimensionally.
4.0.15.0.1
GPL 3.0
sc.fiji » Image_Expression_Parser
Image Expression Parser plugin for Fiji.
3.0.0Image_Expression_Parser-3...
GPL 3.0
sc.fiji » Interactive_3D_Surface_Plot
Interactive 3D Surface Plot plugin for Fiji.
2.4.1Interactive_3D_Surface_Pl...
GPL 3.0
sc.fiji » IsoData_Classifier
IsoData Classifier plugin for Fiji.
2.0.0IsoData_Classifier-2.0.1
GPL 3.0
sc.fiji » Kuwahara_Filter
Kuwahara Filter plugin for Fiji.
2.0.0Kuwahara_Filter-2.0.1
MIT
sc.fiji » KymographBuilder
KymographBuilder: Yet Another Kymograph Fiji plugin.
1.2.43.0.0
GPL 2.0
sc.fiji » LSM_Reader
LSM Reader plugin for Fiji.
4.1.1LSM_Reader-4.1.2
GPL 2.0
sc.fiji » LSM_Toolbox
LSM Toolbox plugin for Fiji.
4.1.1LSM_Toolbox-4.1.2
GPL 3.0
sc.fiji » Lasso_and_Blow_Tool
Lasso and Blow Tool plugin for Fiji.
2.0.1Lasso_and_Blow_Tool-2.0.2
GPL 3.0
sc.fiji » Linear_Kuwahara
Linear Kuwahara plugin for Fiji.
2.0.0Linear_Kuwahara-2.0.1
GPL 3.0
sc.fiji » LocalThickness_
Local Thickness is used to compute the local thickness of a 3D image stack.
4.0.15.0.0
GPL 3.0
sc.fiji » MTrack2_
MTrack2 plugin for Fiji.
2.0.02.0.1
GPL 3.0
sc.fiji » M_I_P
M I P plugin for Fiji.
2.0.02.0.1
GPL 3.0
sc.fiji » Manual_Tracking
Manual Tracking plugin for Fiji.
2.1.0Manual_Tracking-2.1.1
BSD
sc.fiji » MosaicJ_2.0.0✔
GPL 3.0
sc.fiji » Multi_Kymograph
Measure velocities of moving structures in an image time series.
2.0.0Multi_Kymograph-3.0.1
GPL 3.0
sc.fiji » PIV_analyser
PIV analyser plugin for Fiji.
1.1.1PIV_analyser-2.0.0
sc.fiji » PointPicker_2.0.0✔
GPL 3.0
sc.fiji » QuickPALM_
QuickPALM plugin for Fiji.
1.1.11.1.2
GPL 3.0
sc.fiji » RATS_
RATS plugin for Fiji.
2.0.02.0.2
GPL 3.0
sc.fiji » Reconstruct_Reader
Reconstruct Reader plugin for Fiji.
2.0.2Reconstruct_Reader-2.0.5
GPL 3.0
sc.fiji » SPIM_Opener
SPIM Opener plugin for Fiji.
2.0.1SPIM_Opener-2.0.2
GPL 2.0
sc.fiji » SPIM_Registration
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy ...
5.0.85.0.25
GPL 3.0
sc.fiji » Samples_
Samples plugin for Fiji.
2.0.12.0.3
GPL 3.0
sc.fiji » Series_Labeler
Series Labeler plugin for Fiji.
2.0.0Series_Labeler-2.0.1
sc.fiji » SheppLogan_2.0.0✔
GPL 3.0
sc.fiji » Simple_Neurite_Tracer
The ImageJ framework for semi-automated tracing of neurons and other tube-like structures.
3.1.03.1.10
Apache 2.0
sc.fiji » Siox_Segmentation
Siox Segmentation plugin for Fiji.
1.0.4Siox_Segmentation-1.0.5
GPL 3.0
sc.fiji » Skeletonize3D_
Skeletonize3D plugin for Fiji.
2.1.02.1.1
BSD
sc.fiji » Snakuscule_2.0.0✔
GPL 3.0
sc.fiji » SplineDeformationGenerator_
SplineDeformationGenerator plugin for Fiji.
2.0.02.0.2
BSD
sc.fiji » StackReg_2.0.0✔
GPL 3.0
sc.fiji » Stack_Manipulation
Stack Manipulation plugin for Fiji.
2.0.1Stack_Manipulation-2.1.2
BSD
sc.fiji » Statistical_Region_Merging
Statistical Region Merging plugin for Fiji.
2.0.0Statistical_Region_Mergin...
GPL 2.0
sc.fiji » Stitching_
A plugin for reconstructing big images/stacks from an arbitrary number of tiled input images/stacks.
3.1.13.1.9
GPL 3.0
sc.fiji » Sync_Win
Sync Win plugin for Fiji.
1.7-fiji3Sync_Win-1.7-fiji4
GPL 3.0
sc.fiji » Thread_Killer
Thread Killer plugin for Fiji.
2.0.0Thread_Killer-2.0.1
GPL 3.0
sc.fiji » Time_Lapse
Time Lapse tools written in conjunction with the work for "A Doppler effect in embryonic pattern formation", Soroldoni ...
2.0.1Time_Lapse-2.1.1
GPL 3.0
sc.fiji » Time_Stamper
Time Stamper plugin for Fiji.
2.0.0Time_Stamper-2.1.0
GPL 3.0
sc.fiji » ToAST_
ToAST plugin for Fiji.
25.0.125.0.2
GPL 3.0
sc.fiji » TopoJ_
TopoJ plugin for Fiji.
2.0.02.0.1
GPL 3.0
sc.fiji » TrackMate_
TrackMate plugin for Fiji.
3.4.27.11.1
GPL 3.0
sc.fiji » Trainable_Segmentation
Trainable Segmentation plugin for Fiji.
3.2.44.0.0
GPL 2.0
sc.fiji » TrakEM2_Archipelago
TrakEM2 Support for Fiji Archipelago
2.0.1TrakEM2_Archipelago-2.0.4
BSD
sc.fiji » TurboReg_2.0.0✔
sc.fiji » UnwarpJ_2.0.0✔
GPL 3.0
sc.fiji » VIB-lib
Support library for all the VIB stuff.
2.1.1VIB-lib-2.2.0
GPL 3.0
sc.fiji » VIB_
VIB plugin for Fiji.
3.0.14.0.0
GPL 3.0
sc.fiji » Vaa3d_Reader
Custom reader for Vaa3D application 3D volume file formats .v3draw and .v3dpbd.
2.0.1Vaa3d_Reader-2.0.3
GPL 3.0
sc.fiji » Vaa3d_Writer
Plugin to write .v3draw files readable by Vaa3d.
1.0.1Vaa3d_Writer-1.0.3
GPL 3.0
sc.fiji » Video_Editing
Video Editing plugin for Fiji.
2.0.0Video_Editing-2.0.1
GPL 2.0
sc.fiji » View5D_
View5D plugin for Fiji.
1.3.12.3.6
GPL 3.0
sc.fiji » Volume_Calculator
The Volume Calculator plugin is designed to let users measure the volumes of arbitrary segments of blood vessels by ...
2.0.13.0.0
GPL 3.0
sc.fiji » Volume_Viewer
Volume Viewer plugin for Fiji.
2.01.1Volume_Viewer-2.01.4
GPL 3.0
sc.fiji » bUnwarpJ_
bUnwarpJ plugin for Fiji.
2.6.52.6.13
GPL 3.0
sc.fiji » bij
Biomedical imaging software, manuals, documentation and presentations.
0.1.0bij-1.0.0
GPL 3.0
sc.fiji » blockmatching_
Block Matching plugin for Fiji.
2.1.12.1.4
GPL 3.0
sc.fiji » fiji-compat
Old compatibility layer for Fiji.
2.0.22.0.3
GPL 3.0
sc.fiji » fiji-lib
Utility classes for Fiji-based projects.
2.1.1fiji-lib-2.1.3
BSD
sc.fiji » imageware2.0.0✔
BSD
sc.fiji » javac1.6.0.24-ubuntu-fiji2✔
BSD +1
sc.fiji » legacy-imglib1
This project serves purely for phasing out ImgLib1 in favor of ImgLib2.
1.1.61.1.11
GPL 3.0
sc.fiji » level_sets
Level Sets plugin for Fiji.
1.0.1level_sets-1.0.2
BSD
sc.fiji » mij1.3.6-fiji2✔
LGPL 3.0
sc.fiji » pal-optimization
PAL: Phylogenetic Analysis Library
2.0.0pal-optimization-2.0.1
GPL 3.0
sc.fiji » panorama_
panorama plugin for Fiji.
3.0.13.0.2
GPL 3.0
sc.fiji » register_virtual_stack_slices
Registers image slices from a sequence of image slices stored in a folder.
3.0.13.0.8
GPL 3.0
sc.fiji » registration_3d
registration 3d plugin for Fiji.
2.0.0registration_3d-2.0.1
BSD
sc.fiji » wavelets2.0.0✔
GPL 2.0
sc.fiji » bigwarp_fiji
A tool for manual pointwise deformable registration using bigdataviewer.
2.1.59.3.0
GPL 2.0
sc.fiji » trakem2_tps
Thin plate splines in TrakEM2.
1.1.22.0.0
GPL 2.0
sc.fiji » z_spacing
Z spacing plugin for Fiji.
1.0.21.1.2
BSD 2-clause
sc.fiji » bigdataviewer-core
BigDataViewer core classes with minimal dependencies.
3.0.310.6.4
GPL 3.0
sc.fiji » bigdataviewer-server
A web server for BigDataViewer datasets.
2.1.03.1.2
GPL 3.0
sc.fiji » bigdataviewer_fiji
Fiji plugins for starting BigDataViewer and exporting data.
3.0.06.2.2
BSD 2-clause
sc.fiji » spim_data
representation of multi-angle, multi-channel (etc.) SPIM images and their registration
2.2.02.3.0
GPL 3.0
sc.fiji » T2-NIT
T2-NIT component of TrakEM2 suite.
1.1.11.1.4
GPL 3.0
sc.fiji » T2-TreelineGraph
T2-TreelineGraph component of TrakEM2 suite.
1.1.11.1.4
GPL 3.0
sc.fiji » TrakEM2_
TrakEM2 plugin for ImageJ.
1.0h1.3.10
GPL 3.0
sc.fiji » VectorString
VectorString component of TrakEM2 suite.
2.0.03.0.0
GPL 3.0
sc.fiji » mpicbg-trakem21.2.3✔