SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

BigDataViewer backend for N5, Zarr, etc.

The SSH/SFTP-specific part of the ImageJ Updater (TAFKA Fiji Updater).

Keeps components of ImageJ up-to-date.

Cell Counter plugin for ImageJ.

Segmentation plugin for Indago projects, based on the one and only Labkit

TrackMate detector based on the Weka trainable segmentation plugin.

TrackMate detector based on Ilastik.

These ImageJ plugins wrap ilastik workflows

Segmentation plugin for tr2d based on Fiji's Trainable Weka Segmentation

A Fiji plugin to easily visualize OME metadata.