SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

The executable which runs ImageJ. Its purpose is also to make sure that updates downloaded by the ImageJ Updater will be put into place before starting the Java Virtual Machine.

ImageJ utilities and commands for stitching various datasets

Fiji plugins for starting BigDataViewer and exporting data.

A service for displaying plots in ImageJ.

Transformation and composition by function.

TrackMate oneat extension.

Functions for working with ImageJ in scientific notebook software.

Core tool plugins for ImageJ.

ImageJ Updater support for uploading via SSH.

Various Java code for ImageJ