SciJava Common is a shared library for SciJava software. It provides a plugin framework, with an extensible mechanism for service discovery, backed by its own annotation processor, so that plugins can be loaded dynamically. It is used by downstream projects in the SciJava ecosystem, such as ImageJ and SCIFIO.

Open source ImageJ extensions and utilities for transferring ImageJ data structures between MATLAB and an external ImageJ application, or running ImageJ from within MATLAB.

ImageJ 1.x support for ImageJ-OMERO.

Search plugins to enable BIII search in SciJava.

Batteries-included Fiji plugin: drag-and-drop / clipboard opening of OME-Zarr, opening-behavior settings and dialogs. Pulls in the imglib2 core, both backends (N5, zarr-java), and the Fiji integration layer.

The Domain Presentation Layer (DPL) of BoneJ2, i.e. the commands that wrap the needed ops, and present results for skeletal biologists.

ELEPHANT client application implemented as a Mastodon plugin

Some plugins for ImageJ

New Era Painting and annotation tool

Mastodon plugin for fitting ellipsoids around spots

The Cx3D modeling framework in SciView and SNT.